Welcome to ConnecTF

Query transcription factor and target gene interactions.

Learn MoreGet StartedArabidopsisMaizeRice

Read more at Plant Physiology: ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks

Data Overview
No. of TFsTF‑target interactions
in vivo TF‑binding (ChIP‑seq)107301,388
in vitro TF‑binding (DAP‑seq)32492,814
TF‑regulation545,008
Data Overview
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Quick search for Transcription Factors in the database, e.g. Zm00001d020430 (ra1).

Limit results to target genes of interest

Choose from provided gene lists or upload your own list to limit query result.

Networks

Visualize interactions between queried transcription factors and its targets as a network.

network

Precision—Recall Analysis (AUPR)

Prune predicted networks using validated TF-target interactions returned by your query.

network

Motif Enrichment

Discover enriched transcription factor binding motifs in different gene regions.

motif enrichment

Gene Set Enrichment

Visualize pairwise significance of overlap between queried TF-target analyses.

gene set enrichment

Sungear

Visualize how target genes are distributed between queried TF-target analyses.

sungear